Stem-loop sequence sly-MIR408

AccessionMI0033679 (change log)
DescriptionSolanum lycopersicum miR408 stem-loop
Literature search

9 open access papers mention sly-MIR408
(22 sentences)

Stem-loop 
   --  u  a      c   c   a     ag   u    uuu 
5'   ga ag cgggga gag cag gcaug  aug gcaa   u
     || || |||||| ||| ||| |||||  ||| ||||    
3'   cu uc gucccu cuc guc cguac  uau cguu   u
   uc  c  g      u   c   a     cu   c    ucg
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (SL2.50; GCA_000188115.2) Overlapping transcripts
chr1: 91040515-91040596 [-]
intergenic
Database links

Mature sequence sly-miR408

Accession MIMAT0042005
Sequence

6 -  

acggggacgagccagagcaug

 - 26

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Evidence experimental; Illumina [1]

References

1
PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).