Stem-loop sequence sfr-mir-13a

AccessionMI0033614 (change log)
DescriptionSpodoptera frugiperda miR-13a stem-loop
Literature search

1 open access papers mention sfr-mir-13a
(1 sentences)

Stem-loop 
            a  a     ucaa    -   -   --g   ua   -        c   g    a   uauc 
5' gcugguagu uu guggg    uggu uuc ccg   gcc  gcc ugucaaag ggc guga aug    c
   ||||||||| || |||||    |||| ||| |||   |||  ||| |||||||| ||| |||| |||     
3' ugaccguca ga cauuc    acca gag ggc   ugg  ugg guaguuuc ccg cacu uac    g
            c  -     cugc    c   a   auu   -c   u        a   a    a   uacu
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (ASM75363v2; GCA_000753635.2) Overlapping transcripts
JQCY02000649.1: 55432-55568 [-]
intergenic
Clustered miRNAs
< 10kb from sfr-mir-13a
sfr-mir-2aJQCY02000649.1: 55599-55680 [-]
sfr-mir-13aJQCY02000649.1: 55432-55568 [-]
sfr-mir-13bJQCY02000649.1: 55342-55420 [-]
sfr-mir-2bJQCY02000649.1: 55212-55277 [-]
sfr-mir-2cJQCY02000649.1: 55067-55151 [-]
Database links

Mature sequence sfr-miR-13a-5p

Accession MIMAT0041906
Sequence

41 -  

cugucaaagcggcggugaaaug

 - 62

Get sequence
Evidence experimental; Illumina [1]

Mature sequence sfr-miR-13a-3p

Accession MIMAT0041907
Sequence

75 -  

uaucacagccacuuugauguggu

 - 97

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:25693181 "Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21" Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK PLoS One. 10:e0116988(2015).