miRBase entry: sfr-mir-13a

Stem-loop sfr-mir-13a


Accession
MI0033614
Description
Spodoptera frugiperda sfr-mir-13a precursor miRNA

Literature search
1 open access papers mention sfr-mir-13a
(1 sentences)

Sequence

gcugguaguauuagugggucaaugguuucccgggccuagcCUGUCAAAGCGGCGGUGAAAUGuauccgucaucaUAUCACAGCCACUUUGAUGUGGUcgguuuacggagagcaccacguccuuacagcacugccagu
(((((((((.((.(((((....((((((((((((((..(((((((((((.(((.((((.(((..........))).)))).))).)))))))).))).))))..))).))).))))....))))))).)))))))))

Structure
         a  a     ucaa    -   -   --    ua   -        C   G    A   uauc 
gcugguagu uu guggg    uggu uuc ccg  ggcc  gcC UGUCAAAG GGC GUGA AUG    c
||||||||| || |||||    |||| ||| |||  ||||  ||| |||||||| ||| |||| |||     
ugaccguca ga cauuc    acca gag ggc  uugg  UGG GUAGUUUC CCG CACU Uac    g
         c  -     cugc    c   a   au    -c   U        A   A    A   uacu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JQCY02000649.1: 55432-55568 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from sfr-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sfr-miR-13a-5p

Accession MIMAT0041906
Description Spodoptera frugiperda sfr-miR-13a-5p mature miRNA
Sequence 41 - CUGUCAAAGCGGCGGUGAAAUG - 62
Evidence experimental
Illumina [1]

Mature sfr-miR-13a-3p

Accession MIMAT0041907
Description Spodoptera frugiperda sfr-miR-13a-3p mature miRNA
Sequence 75 - UAUCACAGCCACUUUGAUGUGGU - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25693181
    Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
    Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
    PLoS One (2015) 10:e0116988