miRBase entry: sfr-mir-317

Stem-loop sfr-mir-317


Accession
MI0033603
Description
Spodoptera frugiperda sfr-mir-317 precursor miRNA

Literature search
1 open access papers mention sfr-mir-317
(1 sentences)

Sequence

gaacgaccGGGUGCCACGCUGUGCUCUCUcgggaauuaaugcagagUGAACACAGCUGGUGGUAUCUcaguuguuc
(((((((.(((((((((((((((.((.(((.............))).)).))))))..)))))))))..)))))))

Structure
       -c         --      C  U   gggaa 
gaacgac  GGGUGCCAC  GCUGUG UC CUc     u
|||||||  |||||||||  |||||| || |||     u
cuuguug  UCUAUGGUG  CGACAC AG gag     a
       ac         GU      A  U   acgua 


Annotation confidence Not enough data
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Genome context
JQCY02003144.1: 10491-10566 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sfr-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sfr-miR-317-5p

Accession MIMAT0041884
Description Spodoptera frugiperda sfr-miR-317-5p mature miRNA
Sequence 9 - GGGUGCCACGCUGUGCUCUCU - 29
Evidence experimental
Illumina [1]

Mature sfr-miR-317-3p

Accession MIMAT0041885
Description Spodoptera frugiperda sfr-miR-317-3p mature miRNA
Sequence 47 - UGAACACAGCUGGUGGUAUCU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25693181
    Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
    Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
    PLoS One (2015) 10:e0116988