Stem-loop sequence sfr-mir-2c

Accession

MI0033539 (change log)

Description

Spodoptera frugiperda miR-2c stem-loop

Literature search

1 open access papers mention sfr-mir-2c
(2 sentences)

Stem-loop

        u      -          -        ----uc     a 
5' gcgcg cagggg gucagcaaag ugguugug      uuaug g
   ||||| |||||| |||||||||| ||||||||      ||||| a
3' ugcgc guuucu caguuguuuc accgacac      aguac u
        u      u          g        uauaca     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM75363v2; GCA_000753635.2): JQCY02000649.1: 55067-55151 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sfr-mir-2c

• sfr-mir-2a: JQCY02000649.1: 55599-55680 [-]
• sfr-mir-13a: JQCY02000649.1: 55432-55568 [-]
• sfr-mir-13b: JQCY02000649.1: 55342-55420 [-]
• sfr-mir-2b: JQCY02000649.1: 55212-55277 [-]
• sfr-mir-2c: JQCY02000649.1: 55067-55151 [-]

Database links

• miRBase Tracker:MI0033539

Mature sequence sfr-miR-2c-5p

• Accession: MIMAT0041763
• Sequence: 14 - ucagcaaagugguugugucuua - 35
• Evidence: experimental; Illumina [1]

Mature sequence sfr-miR-2c-3p

• Accession: MIMAT0041764
• Sequence: 51 - uaucacagccagcuuuguugacu - 73
• Evidence: experimental; Illumina [1]

References

1. PMID:25693181 "Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21" Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK PLoS One. 10:e0116988(2015).