miRBase entry: gma-MIR10442

Stem-loop gma-MIR10442


Accession
MI0033507
Description
Glycine max gma-MIR10442 precursor miRNA


Sequence

gcuccgcucgCUACAUGCUGCACUUGGAUCCucacuaagugaagaaucacuccauuuagagcaugcucgucuuggccgcaugcacugcaagauuucuauuaugcuuguggagcaaaucacugcauauacuguuaaggaaaggagcgauggcaacauauacuguugccagccaaucucaaguccugcuucacuucaguuaggauccaugugcagcauguagugaguggagua
(((((((((((((((((((((((.((((((((.(((((((((((................((((((...........)))))).(((((((..(......)..))))))).(((......)))...........((((...(((...((((((((.....))))))))......)))...)))).)))))))).))).)))))))).))))))))))))))))))))))).

Structure
-                       U        c   -        aaucacuccauuuagagcaugcucgucuuggccgcaugcacugcaagauuucuauuaugcuuguggagcaaaucacugcauauacuguua    aag   ---cga        u 
 gcuccgcucgCUACAUGCUGCAC UGGAUCCu acu aagugaag                                                                                          agga   gag      uggcaaca a
 ||||||||||||||||||||||| |||||||| ||| ||||||||                                                                                          ||||   |||      |||||||| u
 ugaggugagugauguacgacgug accuagga uga uucacuuc                                                                                          uccu   cuc      accguugu a
a                       u        u   c        -----------------------------------------------------------------------------------------g    gaa   uaaccg        c 


Annotation confidence Not enough data
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Genome context
chr18: 29660557-29660787 [+]

Database links

Mature gma-miR10442

Accession MIMAT0041715
Description Glycine max gma-miR10442 mature miRNA
Sequence 11 - CUACAUGCUGCACUUGGAUCC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562