miRBase entry: gma-MIR10428

Stem-loop gma-MIR10428


Accession
MI0033482
Description
Glycine max gma-MIR10428 precursor miRNA


Sequence

ccaacaugagacuuuuaacauguuuugucuucacucacacguuuucugaaaacacuucccagaaggcuacucaucccauaauugcuucaaggcaaacacacuuaacuuuggaguucuuaagugacggacuaccaaaaaggagaugcaucuuguuaguauagguaauaucaauuaauuuuuuuaagucauccucaauuguacaguuucauacuuguauagagggauccaaagauuguacaaguaugauauuguacaauugaagaugacuuaaaggaauuaauuaguauuaucuauacaacaaaaugcauauacuuuuugguagccuauuacuuaagaacuccacaauuaagcaugcuuaucuuggagcaauuaagggaugagugaccuugucggaaguuuccaagaaagcgugugaaUGAGGACAAAACACGUUGAAAAGUcucguguuag
..(((((((((((((((((.(((((((((((((.(((((((((((((......((((((.(.((((.((((((((((.((((((((((((((.((.((..(((((...((((((((((((((((.((.(((((((((((...((((((.(((((.(((((((((((((.(((((((((((((((((((((.(((((((((((((.((((((((((((.....((((....)))))))))))))))).))))))))))))).))))))))))))))))))))).)))))))))))))))))).))))))...)))))))))))))..))))))))))))))))...)))))..)).)).)))))))))))))).)))))))))).)))).).)))))).....))))))))))))).))))))))))))).)))).)))))))))))))..

Structure
cc             -    a             c             gaaaac      c g    c          a              c  a  ca     cuu                -c  a           gag      c     a             c                     c             u            agagg    c 
  aacaugagacuuu uaac uguuuugucuuca ucacacguuuucu      acuucc a aagg uacucauccc uaauugcuucaagg aa ca  cuuaa   uggaguucuuaaguga  gg cuaccaaaaag   augcau uuguu guauagguaauau aauuaauuuuuuuaagucauc ucaauuguacagu ucauacuuguau     gauc a
  ||||||||||||| |||| ||||||||||||| |||||||||||||      |||||| | |||| |||||||||| |||||||||||||| || ||  |||||   ||||||||||||||||  || |||||||||||   |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||     ||||  
  uugugcucUGAAA GUUG ACAAAACAGGAGU agugugcgaaaga      ugaagg u uucc gugaguaggg auuaacgagguucu uu gu  gaauu   accucaagaauucauu  cc gaugguuuuuc   uacgua aacaa cauaucuauuaug uuaauuaaggaaauucaguag aguuaacauguua aguaugaacaug     uuag a
ga             A    C             a             -accuu      c g    a          a              a  c  ac     aac                au  -           aua      a     -             a                     a             u            -----    a 


Annotation confidence Not enough data
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Genome context
chr12: 9669216-9669665 [+]

Database links

Mature gma-miR10428

Accession MIMAT0041690
Description Glycine max gma-miR10428 mature miRNA
Sequence 417 - UGAGGACAAAACACGUUGAAAAGU - 440
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562