Stem-loop sequence ssc-mir-4331-2

Accession

MI0033415 (change log)

Description

Sus scrofa miR-4331-2 stem-loop

Literature search

2 open access papers mention ssc-mir-4331-2
(44 sentences)

Stem-loop

        -    g  g       a      uuggau 
5' agcug uggc ua aucacag cacagc      c
   ||||| |||| || ||||||| ||||||       
3' ucgac accg au ugguguc gugucg      u
        g    g  g       g      uugugg 

Deep sequencing

136 reads, 1.11e+04 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr14: 144183485-144183553 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033415

Mature sequence ssc-miR-4331-5p

• Accession: MIMAT0037379
• Sequence: 6 - uggcguagaucacagacacagc - 27
• Deep sequencing: 96 reads, 12 experiments
• Evidence: experimental; Illumina [3]

References

1. PMID:25230983 "The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing" Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M J Appl Genet. 56:239-252(2015).