miRBase entry: aga-mir-2944b

Stem-loop aga-mir-2944b


Accession
MI0033339
Description
Anopheles gambiae aga-mir-2944b precursor miRNA

Literature search
5 open access papers mention aga-mir-2944b
(17 sentences)

Sequence

GAAGGAACUCCCGGUGUGAUAUGuuggaaaauccguaccaUAUCACAGCGGUAGUUACCUG
..(((((((.(((.(((((((((.((((...))))...))))))))).))).)))).))).

Structure
GA   -    C   G         --u    a 
  AGG AACU CCG UGUGAUAUG   ugga  
  ||| |||| ||| |||||||||   |||| a
  UCC UUGA GGC ACACUAUac   gccu  
-G   A    U   G         cau    a 


Annotation confidence Not enough data
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Genome context
chr3R: 43009067-43009127 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from aga-mir-2944b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aga-miR-2944b-5p

Accession MIMAT0041507
Description Anopheles gambiae aga-miR-2944b-5p mature miRNA
Sequence 1 - GAAGGAACUCCCGGUGUGAUAUG - 23
Evidence experimental
Illumina [1]

Mature aga-miR-2944b-3p

Accession MIMAT0041508
Description Anopheles gambiae aga-miR-2944b-3p mature miRNA
Sequence 41 - UAUCACAGCGGUAGUUACCUG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25766668
    The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
    Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
    BMC Genomics (2015) 16:100