miRBase entry: aga-mir-998

Stem-loop aga-mir-998


Accession
MI0033334
Description
Anopheles gambiae aga-mir-998 precursor miRNA

Literature search
1 open access papers mention aga-mir-998
(1 sentences)

Sequence

GCUGAACUCUCGUGGGUCUGCaguauuuacaagcggccacaucguucaugUAGCACCAUGAGAUUCAGCUC
((((((.((((((((..(((((.........(((((.....)))))..)))))..))))))))))))))..

Structure
--      C        GU     guauuuaca     c 
  GCUGAA UCUCGUGG  CUGCa         agcgg c
  |||||| ||||||||  |||||         ||||| a
  CGACUU AGAGUACC  GAUgu         uugcu c
CU      -        AC     -------ac     a 


Annotation confidence Not enough data
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Genome context
chr2R: 13042402-13042472 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aga-mir-998
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aga-miR-998-5p

Accession MIMAT0041499
Description Anopheles gambiae aga-miR-998-5p mature miRNA
Sequence 1 - GCUGAACUCUCGUGGGUCUGC - 21
Evidence experimental
Illumina [1]

Mature aga-miR-998-3p

Accession MIMAT0041500
Description Anopheles gambiae aga-miR-998-3p mature miRNA
Sequence 51 - UAGCACCAUGAGAUUCAGCUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25766668
    The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
    Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
    BMC Genomics (2015) 16:100