miRBase entry: cgr-mir-3535

Stem-loop cgr-mir-3535


Accession
MI0033093
Description
Cricetulus griseus cgr-mir-3535 precursor miRNA


Sequence

22831 reads, 320 reads per million, 6 experiments
uggggcuggcuuuuuauauugcugcugaguaaaugacaacUGGAUAUGAUGACUGAUUACCUGAGAaauaauugaugaaaucucaagaaaacuccucuagauagucaaguucugauccagcuaugucagcucaagcagcaacuuuug
..................((((((((((((...(((((.((((((..((((((((.(((...(((......((((.......)))).....)))...))).))))))...))..))))))...))))))))).))))))))......

Structure
uggggcuggcuuuuuaua        -    aaa     --a      AU  ---      A   CCU   Aaauaa    ug 
                  uugcugcu gagu   ugaca   cUGGAU  GA   UGACUG UUA   GAG      uuga  a
                  |||||||| ||||   |||||   ||||||  ||   |||||| |||   |||      ||||  a
                  aacgacga cucg   acugu   gaccua  cu   acugau gau   cuc      aacu  a
------------guuuuc        a    ---     auc      gu  uga      a   cuc   -aaaag    cu 


Annotation confidence Low
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Genome context
JH002341.1: 13475-13621 [-]

Database links

Mature cgr-miR-3535

Accession MIMAT0041163
Description Cricetulus griseus cgr-miR-3535 mature miRNA
Sequence 41 - UGGAUAUGAUGACUGAUUACCUGAGA - 66
Evidence not_experimental

References

  1. PubMed ID: 25689160
    Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
    "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
    "Biotechnol Bioeng (2015) 112:1488-1493