Stem-loop gma-MIR10200

Accession

MI0032967

Description

Glycine max gma-MIR10200 precursor miRNA

Sequence

cuauacaaacacccuugauccuucaaagccucucauagcuccaauacuggcaacaauaauacucuugggcaucugaacuaucuccauucuuuuuuucccccuuucuuugcaguggauuugcgAGGUUUUAAAGAAAUUAAAUGcguuuuuaug
.((((.((((.(..(((((.(((.((((((((.((..((.((((....................))))))............(((((((...................).))))))..)).)))))))).)))..)))))..).)))).))))

Structure

c    c    a cc     -c   c        u  uagcuccaauacuggcaacaauaauacucuugggcaucugaacuauc      - uuuuuuuc 
 uaua aaac c  uugau  cuu aaagccuc ca                                               uccauu c        c
 |||| |||| |  |||||  ||| |||||||| ||                                               |||||| |        c
 guau uuug G  AAUUA  GAA UUUUGGAg gu                                               agguga g        c
-    u    c UA     AA   A        c  ---------------------------------------------uu      c uuucuuuc 

Annotation confidence Not enough data

Genome context

chr6: 48672114-48672266 [-]

Mature gma-miR10200

• Accession: MIMAT0040967
• Description: Glycine max gma-miR10200 mature miRNA
• Sequence: 123 - AGGUUUUAAAGAAAUUAAAUG - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601