Stem-loop gma-MIR10198

Accession

MI0032965

Description

Glycine max gma-MIR10198 precursor miRNA

Sequence

accugaguuucaucaugacugugcgAAGGAACUCGAAAUUCAUAGUgaguucaaagucugcuagguggcccuauucauaacacgugugaaagguaagugugcauauagacccacauuaaggugcaauuaauuaaggugaugcauucuugcaugcaaaacugcuccuuuuggacccacuuuggccauccucauaacccuagcgaaaucuacccucguaggaccaugauucuacuaugaauuucguguuccauccugcagccauggcugauaguaacucu
....(((((((((((((.(((((.((.(((((.(((((((((((((((((.((..(((((((((((((((((.((((((.....))))))))(((((.((((((....(((...(((((.......)))))...))).)))))).)))))..(((....)))(((....)))........)))))..........)))))))....((((....)))))))..)))))).))))))))))))).))))).)).))))).))))).)))....))))).

Structure

accu     ----   -     a     c  A     U             -    u  aa   ----------------       ----------     --------cuauucauaacacgugugaaag     u      auag   cac     gg 
    gaguu    uca ucaug cugug gA GGAAC CGAAAUUCAUAGU gagu ca  guc                ugcuagg          uggcc                              guaag gugcau    acc   auuaa  u
    |||||    ||| ||||| ||||| || ||||| ||||||||||||| |||| ||  |||                |||||||          |||||                              ||||| ||||||    |||   |||||  g
    cucaa    agu gguac gacgu cu ccuug gcuuuaaguauca cuua gu  cag                gcgaucc          accgg                              cguuc uacgua    ugg   uaauu  c
---u     ugau   c     c     c  a     u             u    -  ac   gaugcucccaucuaaa       caauacuccu     uuucacccagguuuuccucgucaaaacgua     u      ---g   aau     aa 

Annotation confidence Not enough data

Genome context

chr3: 8797473-8797750 [+]

Mature gma-miR10198

• Accession: MIMAT0040965
• Description: Glycine max gma-miR10198 mature miRNA
• Sequence: 26 - AAGGAACUCGAAAUUCAUAGU - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601