miRBase entry: gma-MIR5770c

Stem-loop gma-MIR5770c


Accession
MI0032959
Description
Glycine max gma-MIR5770c precursor miRNA

Literature search
2 open access papers mention gma-MIR5770c
(2 sentences)

Sequence

cuaaaggugaUAGGACUAUGGUUUGGAUUUguuucccaagucuuaacaagauuuauuaugaugaaaguuuccuucuaauucuuuuuugggaaccauuauuggaaaaccaaucaaagugauugcuaaaauucugaaagugcugugaggacuauuugcaggaguuuguguggagauugauuuagauaaccuauuguuggcaagguacauguagauggacaugguauaaaguggcuuaugaaggucuucguauuauuuguucgaagugugguuguuaug
........((((((......(((((((((.((((((((((((((...)))))))...((((((...((((((...............)))))))))))).((((...((((((...))))))......)))).(((.(.(((((((.....))))))).).)))..).)))))).)))))))))..))))))..((((((..(((((.....((((((....(((....(((((....)))))....)))....))))))..))))).))))))..

Structure
----------------------------------------------------------------------------cuaaaggu      ACUAUG         U      - aagucuuaacaagauuuauuaugaugaaaguuuccuucuaauucuuuuuugggaaccauuauu 
                                                                                    gaUAGG      GUUUGGAUU guuucc c                                                               g
                                                                                    ||||||      ||||||||| |||||| |                                                               g
                                                                                    uuaucc      uagauuuag uagagg g                                                               a
guauuguuggugugaagcuuguuuauuaugcuucuggaaguauucggugaaauaugguacagguagauguacauggaacgguug      ----aa         u      u uguuugaggacguuuaucaggagugucgugaaagucuuaaaaucguuagugaaacuaaccaaa 


Annotation confidence Not enough data
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Genome context
chr14: 44741121-44741396 [+]

Database links

Mature gma-miR5770c

Accession MIMAT0040959
Description Glycine max gma-miR5770c mature miRNA
Sequence 11 - UAGGACUAUGGUUUGGAUUU - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25465409
    An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
    "Plant Cell (2014) 26:4584-4601