Stem-loop sequence bta-mir-194b

Accession

MI0032935 (change log)

Description

Bos taurus miR-194b stem-loop

Literature search

5 open access papers mention bta-mir-194b
(10 sentences)

Stem-loop

   uu   a c    aaaa         u     -c    aau  a 
5'   ggc g cauc    guaacagca cucca  ugga   ug c
     ||| | ||||    ||||||||| |||||  ||||   || g
3'   ccg c guag    cauugucgu gaggu  accu   ac c
   ug   - a    cuaa         u     ac    --g  a 

Deep sequencing

78 reads, 2.38 reads per million, 42 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 24405226-24405310 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-194b

• bta-mir-215: chr16: 24404933-24405011 [-]
• bta-mir-194-1: chr16: 24405220-24405316 [-]
• bta-mir-194b: chr16: 24405226-24405310 [+]

Database links

• miRBase Tracker:MI0032935

Mature sequence bta-miR-194b-3p

• Accession: MIMAT0040934
• Sequence: 53 - acauggaguugcuguuacaaucg - 75
• Deep sequencing: 69 reads, 41 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:25458694 "Regulating life or death: potential role of microRNA in rescue of the corpus luteum" Maalouf SW, Liu WS, Albert I, Pate JL Mol Cell Endocrinol. 398:78-88(2014).