miRBase entry: cja-mir-3544

Stem-loop cja-mir-3544


Accession
MI0032236
Description
Callithrix jacchus cja-mir-3544 precursor miRNA


Sequence

gaggaggguccggggcugcgcgugguugaagggaugaAGAAAGGCAUCAUAUAGGAGCUGgauaacugugcaucaacuccuguaugaagccguucccaccccccaacuacugacuacggucgcaacccuccuc
(((((((((..(.(((((..((((((((..(((.((..(((.(((.(((((((((((...(((........)))..))))))))))).))).))).)))))..))))))).)....))))).).)))))))))

Structure
         cc g     --cg -       aa   a  aA   A   A           CUG   aac 
gaggagggu  g ggcug    c gugguug  ggg ug  GAA GGC UCAUAUAGGAG   gau   u
|||||||||  | |||||    | |||||||  ||| ||  ||| ||| |||||||||||   |||    
cuccuccca  c cuggc    g caucaac  ccc ac  cuu ccg aguauguccuc   cua   g
         -a g     auca u       cc   -  -c   g   a           -aa   cgu 


Annotation confidence Not enough data
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Genome context
chr10: 126783378-126783510 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cja-mir-3544
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-3544

Accession MIMAT0039692
Description Callithrix jacchus cja-miR-3544 mature miRNA
Sequence 38 - AGAAAGGCAUCAUAUAGGAGCUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857