miRBase entry: cja-mir-17

Stem-loop cja-mir-17


Accession
MI0031910
Description
Callithrix jacchus cja-mir-17 precursor miRNA

Literature search
1 open access papers mention cja-mir-17
(1 sentences)

Sequence

auaauguCAAAGUGCUUACAGUGCAGGUAGugauaugugcaucuacugcagugaaggcacuuguagcauuau
(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))

Structure
       -CA        A  G     G   -  au 
auaaugu   AAGUGCUU CA UGCAG UAG ug  a
|||||||   |||||||| || ||||| ||| ||  u
uauuacg   uucacgga gu acguc auc ac  g
       aug        a  g     -   u  gu 


Annotation confidence Not enough data
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Genome context
chr1: 6514379-6514450 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cja-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-17

Accession MIMAT0039391
Description Callithrix jacchus cja-miR-17 mature miRNA
Sequence 8 - CAAAGUGCUUACAGUGCAGGUAG - 30
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596