Stem-loop sequence ame-mir-2b

Accession

MI0031814 (change log)

Description

Apis mellifera miR-2b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

4 open access papers mention ame-mir-2b
(10 sentences)

Stem-loop

   gac  ca      u     c   c         ----a  g 
5'    gc  cgcuca caaag ugg ugugauaug     ac c
      ||  |||||| ||||| ||| |||||||||     ||  
3'    cg  gcgagu guuuc acc acacuauac     ug u
   aca  ug      -     -   a         gacua  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000054.5: 1246930-1247007 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ame-mir-2b

• ame-mir-2-2: CM000054.5: 1247873-1247956 [+]
• ame-mir-2b: CM000054.5: 1246930-1247007 [-]
• ame-mir-2-1: CM000054.5: 1246924-1247012 [+]
• ame-mir-13b: CM000054.5: 1246714-1246792 [+]
• ame-mir-13a: CM000054.5: 1246352-1246451 [+]
• ame-mir-2-3: CM000054.5: 1246071-1246170 [+]
• ame-mir-71: CM000054.5: 1245684-1245783 [+]

Database links

• miRBase Tracker:MI0031814

Mature sequence ame-miR-2b-5p

• Accession: MIMAT0037292
• Sequence: 11 - ucaucaaagcuggcugugauauga - 34
• Evidence: experimental; Illumina [1-2]

References

1. PMID:24136738 "The integrative analysis of microRNA and mRNA expression in Apis mellifera following maze-based visual pattern learning" Qin QH, Wang ZL, Tian LQ, Gan HY, Zhang SW, Zeng ZJ Insect Sci. 21:619-636(2014).
2. PMID:22409512 "Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome" Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y Genes Brain Behav. 11:660-670(2012).