miRBase entry: rno-mir-676

Stem-loop rno-mir-676


Accession
MI0031786
Description
Rattus norvegicus rno-mir-676 precursor miRNA
Gene family
MIPF0000471; mir-676

Literature search
3 open access papers mention rno-mir-676
(6 sentences)

Sequence

180724 reads, 228 reads per million, 492 experiments
cuucaccugaaugcaugacucugcaaccuuaggacuugcagaauuaacagaaugCCGUCCUGAGCUUGUCGAGCUAugcguuucugggc
.....((.(((((((((.(((.((((.((((((((..(((............))).)))))))).)))).))).)))))))))..))..

Structure
cuuca  -u         a   u    c        uu   gaauu 
     cc  gaaugcaug cuc gcaa cuuaggac  gca     a
     ||  ||||||||| ||| |||| ||||||||  |||      
     gg  uuugcguAU GAG UGUU GAGUCCUG  Cgu     a
---cg  uc         C   C    C        -C   aagac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrX: 70207015-70207103 [+]

Database links

Mature rno-miR-676

Accession MIMAT0037264
Description Rattus norvegicus rno-miR-676 mature miRNA
Sequence 55 - CCGUCCUGAGCUUGUCGAGCUA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23799049
    Distinctive profile of IsomiR expression and novel microRNAs in rat heart left ventricle
    McGahon MK, Yarham JM, Daly A, Guduric-Fuchs J, Ferguson LJ, Simpson DA, Collins A
    PLoS One (2013) 8:e65809