Stem-loop sequence rno-mir-6317-2

Accession

MI0031775 (change log)

Description

Rattus norvegicus miR-6317-2 stem-loop

Gene family

MIPF0002112; mir-6317

Stem-loop

   aaaga   -  -     -    --cuu    uc  -  g      ac   a   a       g   aa 
5'      ccu cu agucu ccug     gccu  ug cu caguga  cug gag aaggcuc agc  u
        ||| || ||||| ||||     ||||  || || ||||||  ||| ||| ||||||| |||   
3'      gga ga uuagg ggau     uggg  ac ga gucacu  gac cuc uuccggg uug  u
   -----   a  c     u    cuuau    cu  a  g      cu   a   a       g   ga 

Deep sequencing

87 reads, 0 reads per million, 66 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 259665468-259665594 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000075605 ; ALDH18A1-201; intron 2

Database links

• miRBase Tracker:MI0031775

Mature sequence rno-miR-6317

• Accession: MIMAT0025054
• Sequence: 36 - gugaaccugagagaaaggcuc - 56
• Deep sequencing: 152 reads, 65 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22908386 "MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase" Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC J Biol Chem. 287:25312-25324(2012).