Stem-loop rno-mir-3542-2

Accession

MI0031767

Description

Rattus norvegicus rno-mir-3542-2 precursor miRNA

Gene family

MIPF0002110; mir-3542

Sequence

317 reads, 5 reads per million, 150 experiments

ccugaagaaaucgagaacuaugguagggagaguggggcauuggagcugcacagaggagggucaggccucugggugguagaaccAAGGCUCUUCUUUCCUUGCAGugcaccgaaucgg
.((((.....(((...(((...((((((((((.(((((.((((..((((.((..(((((......)))))...))))))..)))).))))).)))))))))))))....))).))))

Structure

c    agaaa   -aga   aug          u     a    ag    a  -ga     gu 
 cuga     ucg    acu   guagggagag ggggc uugg  cugc ca   ggagg  c
 ||||     |||    |||   |||||||||| ||||| ||||  |||| ||   |||||   
 ggcu     agc    uGA   CGUUCCUUUC UCUCG AAcc  gaug gu   ucucc  a
-    ----a   cacg   ---          U     G    aa    -  ggg     gg 

Annotation confidence Not enough data

Genome context

chr17: 9636468-9636584 [+]

Mature rno-miR-3542

• Accession: MIMAT0017796
• Description: Rattus norvegicus rno-miR-3542 mature miRNA
• Sequence: 84 - AAGGCUCUUCUUUCCUUGCAG - 104
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249