Stem-loop sequence ata-MIR156e

Accession

MI0031722 (change log)

Description

Aegilops tauschii miR156e stem-loop

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156e
(37 sentences)

Stem-loop

   -ugc  au -         -    a        a         a  a      guaaagagga  gau 
5'     ga  g gcugacaga agag gugagcac cagcggcag cu cgucug          cg   g
       ||  | ||||||||| |||| |||||||| ||||||||| || ||||||          ||    
3'     cu  c cgacugucu ucuc cacucgug guugucguc ga gcagau          gc   g
   gccu  cu u         c    c        c         -  c      agagagagaa  gua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr5: 232754845-232754978 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031722

Mature sequence ata-miR156e-5p

• Accession: MIMAT0037238
• Sequence: 11 - ugacagaagagagugagcac - 30
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR156e-3p

• Accession: MIMAT0037239
• Sequence: 104 - gcucacccucucucugucagc - 124
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).