Stem-loop ata-MIR160c

Accession

MI0031703

Description

Aegilops tauschii ata-MIR160c precursor miRNA

Gene family

MIPF0000032; MIR160

Sequence

cgugcuugugUGCCUGGCUCCCUGUAUGCCAcucauguagcccaacccgcggcgugauuggaugcugugggugGCGUGCAAGGAGCCAAGCAUGcguacauaca
.((((..((((((.(((((((.((((((((((....))......(((((((((((......))))))))))))))))))).))))))).)))))))))).....

Structure

----c    uu      C       C        ----------------------------------  u 
     gugc  gugUGC UGGCUCC UGUAUGCC                                  Ac c
     ||||  |||||| ||||||| ||||||||                                  ||  
     caug  cGUACG ACCGAGG ACGUGCGg                                  ug a
acaua    --      A       A        ugggugucguagguuagugcggcgcccaacccga  u 

Annotation confidence Not enough data

Genome context

chr7: 416809197-416809300 [+]

Mature ata-miR160c-5p

• Accession: MIMAT0037200
• Description: Aegilops tauschii ata-miR160c-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR160c-3p

• Accession: MIMAT0037201
• Description: Aegilops tauschii ata-miR160c-3p mature miRNA
• Sequence: 74 - GCGUGCAAGGAGCCAAGCAUG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95