Stem-loop ata-MIR167f

Accession

MI0031701

Description

Aegilops tauschii ata-MIR167f precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167f
(12 sentences)

Sequence

ugugagagacUGAAGCUGCCAGCAUGAUCUGCucauccagcaugcgccgaaaccgcguucgguugcgcgggguuaucuuggaauuuuugcuccauCAGAUCAUGCUGCAGCUUCAUuuucucacgg
(((((((((.(((((((((.(((((((((((...((((.((..((((((((......))))).))))).)))).....((((........)))).)))))))))))))))))))).))))))))).

Structure

-         c         C           -------------------Cuc    a  au   -     ac 
 ugugagaga UGAAGCUGC AGCAUGAUCUG                      aucc gc  gcg ccgaa  c
 ||||||||| ||||||||| |||||||||||                      |||| ||  ||| |||||   
 gcacucuuu ACUUCGACG UCGUACUAGAC                      uggg cg  cgu ggcuu  g
g         U         -           uaccucguuuuuaagguucuau    g  --   u     gc 

Annotation confidence Not enough data

Genome context

chr6: 134463342-134463467 [-]

Mature ata-miR167f-5p

• Accession: MIMAT0037196
• Description: Aegilops tauschii ata-miR167f-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGC - 32
• Evidence: experimental ; Illumina [1]

Mature ata-miR167f-3p

• Accession: MIMAT0037197
• Description: Aegilops tauschii ata-miR167f-3p mature miRNA
• Sequence: 96 - CAGAUCAUGCUGCAGCUUCAU - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95