miRBase entry: ata-MIR5062a

Stem-loop ata-MIR5062a


Accession
MI0031696
Description
Aegilops tauschii ata-MIR5062a precursor miRNA
Gene family
MIPF0001922; MIR5062


Sequence

cguagcuucuUGAACCUUAGGGAAAAGCCGCAUaacaccauuaacuugaaaaccacuuaucuuaucccagaacugcuccuaccacaauauaagggguaaaaaaugguuuuuaguuugugaggucauGUGGAUUUUUCACCAAGAUUCAAGugguuauc
.((((((.((((((.(((.((((((((((((((.((..(((.((((.((((((((.((...(((((((........................))))))).)).)))))))))))).)))..)).)))))).)))))).))))).)))))).)))))).

Structure
c      u      C   A  -      -      a  ac   u    u        c  auc       agaacugcucc 
 guagcu cuUGAA CUU GG GAAAAG CCGCAU ac  cau aacu gaaaacca uu   uuauccc           u
 |||||| |||||| ||| || |||||| |||||| ||  ||| |||| |||||||| ||   |||||||            
 uauugg GAACUU GAA CC CUUUUU GGUGua ug  gug uuga uuuuuggu aa   aaugggg           a
c      u      A   -  A      A      c  ga   u    -        a  --a       aauauaacacc 


Annotation confidence Not enough data
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Genome context
chr5: 421456466-421456623 [+]

Database links

Mature ata-miR5062a-5p

Accession MIMAT0037186
Description Aegilops tauschii ata-miR5062a-5p mature miRNA
Sequence 11 - UGAACCUUAGGGAAAAGCCGCAU - 33
Evidence experimental
Illumina [1]

Mature ata-miR5062a-3p

Accession MIMAT0037187
Description Aegilops tauschii ata-miR5062a-3p mature miRNA
Sequence 127 - GUGGAUUUUUCACCAAGAUUCAAG - 150
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95