Stem-loop ata-MIR398f

Accession

MI0031691

Description

Aegilops tauschii ata-MIR398f precursor miRNA

Gene family

MIPF0000107; MIR398

Sequence

cgaggaaguuccugcaGGGUCGAACUGAGAACACAUGagauauauugacgagcgacuaacucaUGUGUUCUCAGGUCGCCCCCGcuggagccuc
.((((...((((.((.(((.(((.(((((((((((((((.((..(((.....))).)).))))))))))))))).))).))).)).))))))))

Structure

c    aag    u  a   U   A               a  ua   a 
 gagg   uucc gc GGG CGA CUGAGAACACAUGag ua  uug c
 ||||   |||| || ||| ||| ||||||||||||||| ||  ||| g
 cucc   gagg cG CCC GCU GACUCUUGUGUacuc au  agc a
-    ---    u  C   C   G               a  -c   g 

Annotation confidence Not enough data

Genome context

chr3: 426489965-426490058 [-]

Mature ata-miR398f-5p

• Accession: MIMAT0037176
• Description: Aegilops tauschii ata-miR398f-5p mature miRNA
• Sequence: 17 - GGGUCGAACUGAGAACACAUG - 37
• Evidence: experimental ; Illumina [1]

Mature ata-miR398f-3p

• Accession: MIMAT0037177
• Description: Aegilops tauschii ata-miR398f-3p mature miRNA
• Sequence: 64 - UGUGUUCUCAGGUCGCCCCCG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95