Stem-loop ata-MIR167b

Accession

MI0031690

Description

Aegilops tauschii ata-MIR167b precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

1 open access papers mention ata-MIR167b
(12 sentences)

Sequence

cacaagcuggUGAAGCUGCCAGCAUGAUCUGAugaccuaacucauggaucagaauccaugucaaucAGGUCAUGCUGGAGUUUCAUCugcuggucgg
.((.(((.(((((((((.((((((((((((((((((.......((((((....))))))))).)))))))))))))))))))))))).))).))...

Structure

--c  a   u         G               -   cuaacuc      c 
   ac agc ggUGAAGCU CCAGCAUGAUCUGAu gac       auggau a
   || ||| ||||||||| ||||||||||||||| |||       ||||||  
   ug ucg CUACUUUGA GGUCGUACUGGAcua cug       uaccua g
ggc  g   u         -               a   -------      a 

Annotation confidence Not enough data

Genome context

chr5: 62966137-62966233 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR167b

Mature ata-miR167b-5p

• Accession: MIMAT0037174
• Description: Aegilops tauschii ata-miR167b-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGA - 32
• Evidence: experimental ; Illumina [1]

Mature ata-miR167b-3p

• Accession: MIMAT0037175
• Description: Aegilops tauschii ata-miR167b-3p mature miRNA
• Sequence: 67 - AGGUCAUGCUGGAGUUUCAUC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95