miRBase entry: ata-MIR396e

Stem-loop ata-MIR396e


Accession
MI0031687
Description
Aegilops tauschii ata-MIR396e precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
1 open access papers mention ata-MIR396e
(1 sentences)

Sequence

cuuugcugucUUCCACAGCUUUCUUGAACUGcaucugcaauugguggaugcuagcuucugcucgcaagaucugcaGUUCAAUAAAGCUGUGGGAAAuugcagagag
((((((.((.((((((((((((.(((((((((((((((.....)))))(((.(((....))).))).....)))))))))).)))))))))))).)).))))))..

Structure
--      u  c            C          ucugcaauuggugga   u   u 
  cuuugc gu UUCCACAGCUUU UUGAACUGca               ugc agc u
  |||||| || |||||||||||| ||||||||||               ||| |||  
  gagacg uA AGGGUGUCGAAA AACUUGacgu               acg ucg c
ga      u  A            U          ----------cuaga   c   u 


Annotation confidence Not enough data
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Genome context
chr7: 76829699-76829804 [+]

Database links

Mature ata-miR396e-5p

Accession MIMAT0037168
Description Aegilops tauschii ata-miR396e-5p mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUG - 31
Evidence experimental
Illumina [1]

Mature ata-miR396e-3p

Accession MIMAT0037169
Description Aegilops tauschii ata-miR396e-3p mature miRNA
Sequence 76 - GUUCAAUAAAGCUGUGGGAAA - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95