miRBase entry: ata-MIR160a

Stem-loop ata-MIR160a


Accession
MI0031681
Description
Aegilops tauschii ata-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160


Sequence

caaugggauaUGCCUGGCUCCCUGUAUGCCAcucgcguagcugccaacucuccaaacccaGCGUUGGCUCUACCGCGGAUGgcgugcgaggagccaagcaugaccgucucucu
..((((..(((((.(((((((.(((((((((.((((((((..((((((.((........)).)))))).))).))))).))))))))).))))))).))))).))))......

Structure
----ca    ga     C       C         c     -   cu      u  cca 
      augg  uaUGC UGGCUCC UGUAUGCCA ucgcg uag  gccaac cu   a
      ||||  ||||| ||||||| ||||||||| ||||| |||  |||||| ||    
      ugcc  guacg accgagg gcgugcgGU GGCGC AUC  CGGUUG Ga   a
ucucuc    -a     a       a         A     C   -U      C  ccc 


Annotation confidence Not enough data
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Genome context
chr5: 381892576-381892688 [-]

Database links

Mature ata-miR160a-5p

Accession MIMAT0037156
Description Aegilops tauschii ata-miR160a-5p mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
Illumina [1]

Mature ata-miR160a-3p

Accession MIMAT0037157
Description Aegilops tauschii ata-miR160a-3p mature miRNA
Sequence 61 - GCGUUGGCUCUACCGCGGAUG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95