Stem-loop ata-MIR169j

Accession

MI0031674

Description

Aegilops tauschii ata-MIR169j precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

1 open access papers mention ata-MIR169j
(1 sentences)

Sequence

ccaucuucgaUAGCCAAGGAUGAUUUGCCUGUGaaacucccuuggcagccgagcucucugccacagagagcggcguccggcgguuccaUGGGCAAGUCACCCUGGCUACCcgaguaccu
.....((((.((((((.((.(((((((((((((.((((.((..(((.(((..((((((((...)))))))))))))).)).)))).))))))))))))))).))))))..)))).....

Structure

ccauc    -a      A  A             a    c  uu   a   ga        c 
     uucg  UAGCCA GG UGAUUUGCCUGUG aacu cc  ggc gcc  gcucucug  
     ||||  |||||| || ||||||||||||| |||| ||  ||| |||  |||||||| c
     gagc  AUCGGU CC ACUGAACGGGUac uugg gg  cug cgg  cgagagac  
uccau    CC      C  -             c    c  -c   -   --        a 

Annotation confidence Not enough data

Genome context

chr5: 446187527-446187645 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR169j

Mature ata-miR169j-5p

• Accession: MIMAT0037142
• Description: Aegilops tauschii ata-miR169j-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGAUUUGCCUGUG - 33
• Evidence: experimental ; Illumina [1]

Mature ata-miR169j-3p

• Accession: MIMAT0037143
• Description: Aegilops tauschii ata-miR169j-3p mature miRNA
• Sequence: 89 - UGGGCAAGUCACCCUGGCUACC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95