Stem-loop ata-MIR169c

Accession

MI0031671

Description

Aegilops tauschii ata-MIR169c precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

1 open access papers mention ata-MIR169c
(1 sentences)

Sequence

ccucgucuggUAGCCAAGGAUGACUUGCCUAuaugcucuuucagaagccccgguuauuccauggcugguuucagaugaguuccaugauaGGCGGUCACCUUGGCUAGCcugagcagc
.((..((.(((((((((((.(((((.((((((..((((..((.((((((..((((((...)))))))))))).)).))))......))))))))))))))))))).))).))..)).

Structure

c  cg  u   -        A     U      ----au    uu  a      cc      u 
 cu  uc ggU AGCCAAGG UGACU GCCUAu      gcuc  uc gaagcc  gguuau  
 ||  || ||| |||||||| ||||| ||||||      ||||  || ||||||  |||||| c
 ga  ag cCG UCGGUUCC ACUGG CGGaua      ugag  ag cuuugg  ucggua  
c  cg  u   A        -     -      guaccu    -u  a      --      c 

Annotation confidence Not enough data

Genome context

AOCO02032078.1: 15408894-15409010 [-]

Mature ata-miR169c-5p

• Accession: MIMAT0037136
• Description: Aegilops tauschii ata-miR169c-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR169c-3p

• Accession: MIMAT0037137
• Description: Aegilops tauschii ata-miR169c-3p mature miRNA
• Sequence: 90 - GGCGGUCACCUUGGCUAGC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95