Stem-loop sequence ata-MIR156b

Accession

MI0031669 (change log)

Description

Aegilops tauschii miR156b stem-loop

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156b
(37 sentences)

Stem-loop

   --ag    a          -      -              gccu   uu      ugaauuaa 
5'     gugg ggcugacaga agagag ugagcacacauggu    uuc  gcaugg        u
       |||| |||||||||| |||||| ||||||||||||||    |||  ||||||         
3'     uauu ccgacugucu ucucuu acucguguguaucg    aag  cguacu        g
   ucaa    a          c      u              ----   uu      ugaagagg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr3: 66945650-66945771 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ata-MIR156b

• ata-MIR156b: chr3: 66945650-66945771 [-]
• ata-MIR156a: chr3: 66945233-66945340 [-]

Database links

• miRBase Tracker:MI0031669

Mature sequence ata-miR156b-5p

• Accession: MIMAT0037132
• Sequence: 11 - ugacagaagagagugagcac - 30
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR156b-3p

• Accession: MIMAT0037133
• Sequence: 91 - gcucauuucucucucugucagc - 112
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).