Stem-loop ata-MIR156b

Accession

MI0031669

Description

Aegilops tauschii ata-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156b
(38 sentences)

Sequence

agguggaggcUGACAGAAGAGAGUGAGCACacauggugccuuucuugcauggugaauuaaugggagaaguucaugcuugaagcuauguguGCUCAUUUCUCUCUCUGUCAGCcauuauaacu
..((((.((((((((((((((((((((((((((((((....(((..((((((..................))))))..))))))))))))))))).)))))).)))))))))).))))....

Structure

--ag    a          -      -              gccu   uu      ugaauuaa 
    gugg ggcUGACAGA AGAGAG UGAGCACacauggu    uuc  gcaugg        u
    |||| |||||||||| |||||| ||||||||||||||    |||  ||||||         
    uauu cCGACUGUCU UCUCUU ACUCGuguguaucg    aag  cguacu        g
ucaa    a          C      U              ----   uu      ugaagagg 

Annotation confidence Not enough data

Genome context

chr3: 66945650-66945771 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR156b

Mature ata-miR156b-5p

• Accession: MIMAT0037132
• Description: Aegilops tauschii ata-miR156b-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature ata-miR156b-3p

• Accession: MIMAT0037133
• Description: Aegilops tauschii ata-miR156b-3p mature miRNA
• Sequence: 91 - GCUCAUUUCUCUCUCUGUCAGC - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95