miRBase entry: ata-MIR166b

Stem-loop ata-MIR166b


Accession
MI0031666
Description
Aegilops tauschii ata-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention ata-MIR166b
(1 sentences)

Sequence

caugguugucgagGGGAAUGACGCCGGGUCCGAAAgagagacgcgcgcauggcgugcguguggcgcguuUCGGACCAGGCUUCAUUCCCCaugacuccau
.((((..((((.(((((((((.(((.(((((((((..(..((((((((.....))))))))..)...))))))))).))).))))))))).)))).))))

Structure
c    uu    a         C   G         -ga ag        a 
 augg  gucg gGGGAAUGA GCC GGUCCGAAA   g  acgcgcgc u
 ||||  |||| ||||||||| ||| |||||||||   |  |||||||| g
 uacc  cagu CCCCUUACU CGG CCAGGCUuu   c  ugugcgug g
-    -u    a         U   A         gcg gg        c 


Annotation confidence Not enough data
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Genome context
chr5: 353695259-353695358 [-]

Database links

Mature ata-miR166b-5p

Accession MIMAT0037126
Description Aegilops tauschii ata-miR166b-5p mature miRNA
Sequence 14 - GGGAAUGACGCCGGGUCCGAAA - 35
Evidence experimental
Illumina [1]

Mature ata-miR166b-3p

Accession MIMAT0037127
Description Aegilops tauschii ata-miR166b-3p mature miRNA
Sequence 70 - UCGGACCAGGCUUCAUUCCCC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95