Stem-loop sequence ata-MIR156a

Accession

MI0031664 (change log)

Description

Aegilops tauschii miR156a stem-loop

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156a
(37 sentences)

Stem-loop

   --uu    -  u        -    a        a      gguu          - g 
5'     ugga gg cugacaga agag gugagcac cgcggu    uccuagcaug c a
       |||| || |||||||| |||| |||||||| ||||||    |||||||||| |  
3'     acuu cc gacugucu ucuc cacucgug gcgucg    agggucguac g g
   uacc    a  -        c    c        c      ----          c c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr3: 66945233-66945340 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ata-MIR156a

• ata-MIR156b: chr3: 66945650-66945771 [-]
• ata-MIR156a: chr3: 66945233-66945340 [-]

Database links

• miRBase Tracker:MI0031664

Mature sequence ata-miR156a-5p

• Accession: MIMAT0037122
• Sequence: 11 - ugacagaagagagugagcac - 30
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR156a-3p

• Accession: MIMAT0037123
• Sequence: 78 - gcucacccucucucugucagc - 98
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).