Stem-loop sequence ata-MIR156c

Accession

MI0031662 (change log)

Description

Aegilops tauschii miR156c stem-loop

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156c
(37 sentences)

Stem-loop

   ----   c  gc         -    -         a      ggcgg         cgc 
5'     gcg gc  ggugacaga agag agugagcac cggccg     gacggcacc   c
       ||| ||  ||||||||| |||| ||||||||| ||||||     |||||||||    
3'     cgu cg  ccacugucu ucuc ucacucgug gccggc     cugccgugg   g
   ucuu   -  -a         a    g         c      ----a         uag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr2: 375901341-375901450 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031662

Mature sequence ata-miR156c-5p

• Accession: MIMAT0037118
• Sequence: 11 - ugacagaagagagugagcac - 30
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR156c-3p

• Accession: MIMAT0037119
• Sequence: 79 - gcucacugcucuaucugucacc - 100
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).