miRBase entry: ata-MIR9863a

Stem-loop ata-MIR9863a


Accession
MI0031654
Description
Aegilops tauschii ata-MIR9863a precursor miRNA
Gene family
MIPF0001998; MIR9863


Sequence

uugucgcucaauUGUUAUGAUCUGCUUCUCAUCugaagacuaguuuauuacauauaagcauauuuuugaaaguuugagagagagaucacaagcagaucccgugcagaagggaacaucauugcuacaacuacaauaauucuuccacuucaagagccauugggccgcuaaacaagucuuuagaUGAGAAGGUAGAUCAUAAUAGCugagcgaaau
...(((((((.((((((((((((((((((((((((((((((.((((((.....))))))....(((((((.((..(((((..........((((((((((........))))...))..)))).............)))))..)))))))))(((....))).........)))))))))))))))).)))))))))))))).)))))))...

Structure
uug       a              -                aguuuauuacauauaagcauau       a  uu     ---agagaucaca    --  ---    gug 
   ucgcuca uUGUUAUGAUCUGC UUCUCAUCugaagacu                      uuuugaa gu  gagag             agca  ga   uccc   c
   ||||||| |||||||||||||| ||||||||||||||||                      ||||||| ||  |||||             ||||  ||   ||||    
   agcgagu GAUAAUACUAGAUG AAGAGUagauuucuga                      agaacuu ca  uucuu             ucgu  cu   aggg   a
uaa       C              G                ---acaaaucgccggguuaccg       -  cc     aauaacaucaaca    ua  aca    aag 


Annotation confidence Not enough data
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Genome context
chr1: 68907222-68907434 [+]

Database links

Mature ata-miR9863a-5p

Accession MIMAT0037104
Description Aegilops tauschii ata-miR9863a-5p mature miRNA
Sequence 13 - UGUUAUGAUCUGCUUCUCAUC - 33
Evidence experimental
Illumina [1]

Mature ata-miR9863a-3p

Accession MIMAT0037105
Description Aegilops tauschii ata-miR9863a-3p mature miRNA
Sequence 182 - UGAGAAGGUAGAUCAUAAUAGC - 203
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95