Stem-loop ata-MIR156d

Accession

MI0031649

Description

Aegilops tauschii ata-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156d
(39 sentences)

Sequence

cucgagagauUGACAGAAGAGAGUGAGCACauggcgugaugccggcauaacauguaugccgucuucgccgcguGCUCACUCCUCUUUCUGUCAGCcucuuucucu
...(((((.(((((((((((((((((((((.(((((....(.(((((((.....))))))).)..))))).))))))))).))).))))))))).))))).....

Structure

--cuc     a         -   -         a     ugau c       a 
     gagag uUGACAGAA GAG AGUGAGCAC uggcg    g cggcaua c
     ||||| ||||||||| ||| ||||||||| |||||    | ||||||| a
     uucuc GACUGUCUU CUC UCACUCGug gccgc    c gccguau u
ucucu     C         U   C         c     --uu u       g 

Annotation confidence Not enough data

Genome context

chr6: 117095392-117095496 [+]

Mature ata-miR156d-5p

• Accession: MIMAT0037094
• Description: Aegilops tauschii ata-miR156d-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature ata-miR156d-3p

• Accession: MIMAT0037095
• Description: Aegilops tauschii ata-miR156d-3p mature miRNA
• Sequence: 74 - GCUCACUCCUCUUUCUGUCAGC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95