Stem-loop sequence ata-MIR156d

Accession

MI0031649 (change log)

Description

Aegilops tauschii miR156d stem-loop

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156d
(38 sentences)

Stem-loop

   --cuc     au        -   -         a     ugau c       a 
5'      gagag  ugacagaa gag agugagcac uggcg    g cggcaua c
        |||||  |||||||| ||| ||||||||| |||||    | ||||||| a
3'      uucuc  acugucuu cuc ucacucgug gccgc    c gccguau u
   ucucu     cg        u   c         c     --uu u       g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM34733v2; GCA_000347335.2): chr6: 117095392-117095496 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031649

Mature sequence ata-miR156d-5p

• Accession: MIMAT0037094
• Sequence: 11 - ugacagaagagagugagcac - 30
• Evidence: experimental; Illumina [1]

Mature sequence ata-miR156d-3p

• Accession: MIMAT0037095
• Sequence: 74 - gcucacuccucuuucugucagc - 95
• Evidence: experimental; Illumina [1]

References

1. PMID:23535592 "Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation" Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu Nature. 496:91-95(2013).