Stem-loop ata-MIR396a

Accession

MI0031647

Description

Aegilops tauschii ata-MIR396a precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention ata-MIR396a
(1 sentences)

Sequence

ggccaugcucUCCACAGGCUUUCUUGAACUGucaacucgcgcgcgccggccauccauggccuuccuuugcugccgaauucgcauaugcucuugcaugucucgaucucgugcgauccgauggaucucugccugccuuguugaugGUUCAAGAAAGUCCUUGGAAAacaugcccgc
((.((((...((((..((((((((((((((((((((..(.(((.((.(((((....)))))..........(((((..(((.((((((....))))))..)))..))).))(((((...)))))...)).))))..))))))))))))))))))))..))))...)))).))..

Structure

--  c    cuc    CA                    uc c   c  cggccauccauggccuuccuuugcu  -   au   -c      u 
  gg caug   UCCA  GGCUUUCUUGAACUGucaac  g gcg gc                         gc cga  ucg  auaugc c
  || ||||   ||||  ||||||||||||||||||||  | ||| ||                         || |||  |||  ||||||  
  cc guac   AGGU  CUGAAAGAACUUGguaguug  c cgu cg                         cg gcu  agc  uguacg u
cg  c    aAA    UC                    uu -   c  ---------ucucuagguagccuag  u   cu   uc      u 

Annotation confidence Not enough data

Genome context

AOCO02019250.1: 2568334-2568507 [+]

Mature ata-miR396a-5p

• Accession: MIMAT0037090
• Description: Aegilops tauschii ata-miR396a-5p mature miRNA
• Sequence: 11 - UCCACAGGCUUUCUUGAACUG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR396a-3p

• Accession: MIMAT0037091
• Description: Aegilops tauschii ata-miR396a-3p mature miRNA
• Sequence: 144 - GUUCAAGAAAGUCCUUGGAAA - 164
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95