miRBase entry: ssc-mir-9800

Stem-loop ssc-mir-9800


Accession
MI0031564
Description
Sus scrofa ssc-mir-9800 precursor miRNA


Sequence

aauugguuuucagaccauugcuaagaugucuuugaaaagaauggugcaagacacuCAUUUGAUUCAGUUGGACACUgaaauaaaua
...(((((....)))))......((.((((((((((..((((((((.....))).)))))..)))))..)))))))..........

Structure
aauugguuuucagaccauugcua  a     --     aa     -   c 
                       ag ugucu  uugaa  gaaug gug a
                       || |||||  |||||  ||||| ||| a
                       UC ACAGG  GACUU  UUUAC cac g
-------------auaaauaaag  -     UU     AG     u   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr16: 42164224-42164309 [+]

Database links

Mature ssc-miR-9800-3p

Accession MIMAT0037018
Description Sus scrofa ssc-miR-9800-3p mature miRNA
Sequence 56 - CAUUUGAUUCAGUUGGACACU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100