miRBase entry: ssc-mir-9788-1

Stem-loop ssc-mir-9788-1


Accession
MI0031549
Description
Sus scrofa ssc-mir-9788-1 precursor miRNA
Gene family
MIPF0002090; mir-9788


Sequence

agggggagguggaccccacccagguaggugcggccccuucguucuacccccggagcccacagggguAGAGGAGAGGCUACCACCACCAcgccugugcc
(((.(..(((((...)))))..(((.((((.((((.((((..((((((((.(.......).)))))))))))).))))..))))))).).))).....

Structure
-----   g gagguggaccccaccca   a    -c    c    gu        c ga 
     agg g                 ggu ggug  ggcc cuuc  ucuacccc g  g
     ||| |                 ||| ||||  |||| ||||  |||||||| |  c
     ucc c                 CCA CCAC  UCGG GAGG  AGAugggg c  c
ccgug   g ----------------A   -    CA    A    --        a ac 


Annotation confidence Not enough data
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Genome context
chr12: 20363731-20363828 [+]

Database links

Mature ssc-miR-9788-3p

Accession MIMAT0037005
Description Sus scrofa ssc-miR-9788-3p mature miRNA
Sequence 67 - AGAGGAGAGGCUACCACCACCA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100