Stem-loop sequence tae-MIR5200

Accession

MI0031542 (change log)

Description

Triticum aestivum miR5200 stem-loop

Gene family

MIPF0001904; MIR5200

Literature search

7 open access papers mention tae-MIR5200
(30 sentences)

Stem-loop

       a           u  a        cuag     u    uuc 
5' acua uuaagccuuag ga uaucuaca    uaagu uuuc   a
   |||| ||||||||||| || ||||||||    ||||| ||||   u
3' uggu gguucggaauc cu auagaugu    auucg aaag   g
       g           c  c        uacg     u    uuu 

Deep sequencing

592429 reads, 2.51e+03 reads per million, 116 experiments

Confidence

Annotation confidence: high

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Comments

This sequence was incorrectly named MIR2032 in [1].

Genome context

• Coordinates: 7B: 3426801-3426893 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0031542

Mature sequence tae-miR5200

• Accession: MIMAT0037000
• Sequence: 66 - uguagauacucccuaaggcuu - 86
• Deep sequencing: 585760 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19499258 "Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv" Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L Funct Integr Genomics. 9:499-511(2009).