miRBase entry: tae-MIR5200

Stem-loop tae-MIR5200


Accession
MI0031542
Description
Triticum aestivum tae-MIR5200 precursor miRNA
Gene family
MIPF0001904; MIR5200

Literature search
7 open access papers mention tae-MIR5200
(30 sentences)

Sequence

517078 reads, 2565 reads per million, 116 experiments
acuaauuaagccuuagugaauaucuacacuaguaaguuuuucuucauguuugaaaugcuuagcauUGUAGAUACUCCCUAAGGCUUggguggu
((((.(((((((((((.((.((((((((....(((((.((((.........)))).)))))....)))))))).)).))))))))))).))))

Structure
    a           u  a        cuag     u    uuc 
acua uuaagccuuag ga uaucuaca    uaagu uuuc   a
|||| ||||||||||| || ||||||||    ||||| ||||   u
uggu ggUUCGGAAUC CU AUAGAUGU    auucg aaag   g
    g           C  C        uacg     u    uuu 


Annotation confidence High
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Comments
This sequence was incorrectly named MIR2032 in [1].

Genome context
7B: 3426801-3426893 [+]

Database links

Mature tae-miR5200

Accession MIMAT0037000
Description Triticum aestivum tae-miR5200 mature miRNA
Sequence 66 - UGUAGAUACUCCCUAAGGCUU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19499258
    Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
    "Funct Integr Genomics (2009) 9:499-511