Stem-loop sequence tae-MIR5200

AccessionMI0031542 (change log)
DescriptionTriticum aestivum miR5200 stem-loop
Gene family MIPF0001904; MIR5200
Literature search

7 open access papers mention tae-MIR5200
(30 sentences)

       a           u  a        cuag     u    uuc 
5' acua uuaagccuuag ga uaucuaca    uaagu uuuc   a
   |||| ||||||||||| || ||||||||    ||||| ||||   u
3' uggu gguucggaauc cu auagaugu    auucg aaag   g
       g           c  c        uacg     u    uuu 
Get sequence
Deep sequencing
592429 reads, 2.51e+03 reads per million, 116 experiments
Confidence Annotation confidence: high
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This sequence was incorrectly named MIR2032 in [1].

Genome context
Coordinates Overlapping transcripts
7B: 3426801-3426893 [+]
Database links

Mature sequence tae-miR5200

Accession MIMAT0037000

66 - 


 - 86

Get sequence
Deep sequencing585760 reads, 116 experiments
Evidence experimental; Illumina [1]


PMID:19499258 "Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv" Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L Funct Integr Genomics. 9:499-511(2009).