miRBase entry: tae-MIR530

Stem-loop tae-MIR530


Accession
MI0031529
Description
Triticum aestivum tae-MIR530 precursor miRNA
Gene family
MIPF0000521; MIR530

Literature search
3 open access papers mention tae-MIR530
(5 sentences)

Sequence

11100 reads, 72 reads per million, 116 experiments
guuaugggauagagcugcauuugcaccugcaccuagagaggaagaaaggucgagggcuuggaacuuggccaugcaugcgauugcgaugcaugcaacguucuccuugacccucucgcucuuccuguaggUGCAGUGGCAUAUGCAACUCUaucacaggca
((..((.(((((((.(((((.(((..((((((((((((((..(((..((((((((....((((((((..(((((((((....)).)))))))))).))))))))))))).)))..)))))....)))))))))..))).))))).))))))).)).)).

Structure
-  ua  g       c     u   ac         ----     ga   aa        gcuu     -   gc       -  g 
 gu  ug gauagag ugcau ugc  cugcaccua    gagag  aga  ggucgagg    ggaac uug  caugcau gc a
 ||  || ||||||| ||||| |||  |||||||||    |||||  |||  ||||||||    ||||| |||  ||||||| ||  
 cg  ac cuaUCUC ACGUA ACG  GACGUggau    uucuc  ucu  ccaguucc    ucuug aac  guacgua cg u
a  -g  a       A     U   GU         gucc     gc   -c        ----     c   --       g  u 


Annotation confidence Not enough data
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Comments
This sequence was incorrectly named MIR2011 in [1].

Genome context
2A: 45376849-45377007 [+]

Database links

Mature tae-miR530

Accession MIMAT0036987
Description Triticum aestivum tae-miR530 mature miRNA
Sequence 129 - UGCAGUGGCAUAUGCAACUCU - 149
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19499258
    Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
    "Funct Integr Genomics (2009) 9:499-511