miRBase entry: tae-MIR9772

Stem-loop tae-MIR9772


Accession
MI0031524
Description
Triticum aestivum tae-MIR9772 precursor miRNA
Gene family
MIPF0001934; MIR9772

Literature search
1 open access papers mention tae-MIR9772
(1 sentences)

Sequence

617026 reads, 3011 reads per million, 116 experiments
agcggccguUGAGAUGAGAUUACCCCAUACcauauagcggcagcucgacuccgcacacgcguagggggcaaucucaccucaacagcuucu
((.(((.((((((.(((((((.((((.(((......((((.((.....))))))......))).)))).))))))).)))))).))).))

Structure
  c   c      A       A    A   cauaua    c  c 
ag ggc guUGAG UGAGAUU CCCC UAC      gcgg ag u
|| ||| |||||| ||||||| |||| |||      |||| || c
uc ucg caacuc acucuaa gggg aug      cgcc uc g
  u   a      c       c    g   cgcaca    -  a 


Annotation confidence High
Do you think this miRNA is real?
Comments
This sequence was incorrectly named MIR2002 in [1].

Genome context
5D: 148334018-148334107 [-]

Database links

Mature tae-miR9772

Accession MIMAT0036982
Description Triticum aestivum tae-miR9772 mature miRNA
Sequence 10 - UGAGAUGAGAUUACCCCAUAC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19499258
    Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
    "Funct Integr Genomics (2009) 9:499-511