miRBase entry: bta-mir-2450d

Stem-loop bta-mir-2450d


Accession
MI0031506
Description
Bos taurus bta-mir-2450d precursor miRNA
Gene family
MIPF0000758; mir-2450

Literature search
1 open access papers mention bta-mir-2450d
(1 sentences)

Sequence

2 reads, 1 reads per million, 2 experiments
agaggcgcgugugccuuuucugcacacuugguauagacucgcacaCAUGGUCAGUAGAGGCGCAUGUGccuuu
.(((((((((((((((((.(((..((..((((........)).))..))..))).))))))))))))))))).

Structure
a                 u   ca  cu  -  aua 
 gaggcgcgugugccuuu cug  ca  ug gu   g
 ||||||||||||||||| |||  ||  || ||    
 uuccGUGUACGCGGAGA GAC  GU  ac cg   a
u                 U   UG  AC  a  cuc 


Annotation confidence Not enough data
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Genome context
chr6: 108173970-108174042 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bta-mir-2450d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2450d

Accession MIMAT0036977
Description Bos taurus bta-miR-2450d mature miRNA
Sequence 46 - CAUGGUCAGUAGAGGCGCAUGUG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24021155
    Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
    "Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ"
    "Vet Immunol Immunopathol (2013) 155:238-244