miRBase entry: bta-mir-378d

Stem-loop bta-mir-378d


Accession
MI0031501
Description
Bos taurus bta-mir-378d precursor miRNA
Gene family
MIPF0000168; mir-378

Literature search
24 open access papers mention bta-mir-378d
(100 sentences)

Sequence

11356 reads, 115 reads per million, 65 experiments
ugggcuuucuggguccaggcagcaguaugcucagggaggcagcuacggugcagagaaagggagcuCUGGACUUGGAGUCAGAAGACCucag
.(((.(((((((.((((((...(((...((((......(((.(...).))).........)))).)))..)))))).))))))).)))...

Structure
--u   c       g      cag   uau    ---agggag   g u 
   ggg uuucugg uccagg   cag   gcuc         gca c  
   ||| ||||||| ||||||   |||   ||||         ||| | a
   uCC GAAGACU AGGUUC   GUC   cgag         cgu g  
gac   A       G      -AG   --u    ggaaagaga   g c 


Annotation confidence Not enough data
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Genome context
chr19: 8813899-8813989 [-]

Database links

Mature bta-miR-378d

Accession MIMAT0036972
Description Bos taurus bta-miR-378d mature miRNA
Sequence 66 - CUGGACUUGGAGUCAGAAGACC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24021155
    Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
    "Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ"
    "Vet Immunol Immunopathol (2013) 155:238-244