miRBase entry: bta-mir-1842

Stem-loop bta-mir-1842


Accession
MI0031498
Description
Bos taurus bta-mir-1842 precursor miRNA
Gene family
MIPF0000788; mir-1842

Literature search
2 open access papers mention bta-mir-1842
(2 sentences)

Sequence

1109 reads, 47 reads per million, 64 experiments
UGGCUCUGUGAGGUCGGCUCAaggugggucuggauguugagcaggccugucagggcguug
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....

Structure
--UG      UG     G      g  ggg 
    GCUCUG  AGGUC GCUCAa gu   u
    ||||||  ||||| |||||| ||    
    cgggac  uccgg cgaguu ua   c
guug      ug     a      g  ggu 


Annotation confidence Not enough data
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Genome context
chr25: 1755151-1755210 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-1842
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-1842

Accession MIMAT0036969
Description Bos taurus bta-miR-1842 mature miRNA
Sequence 1 - UGGCUCUGUGAGGUCGGCUCA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24021155
    Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
    "Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ"
    "Vet Immunol Immunopathol (2013) 155:238-244