miRBase entry: oha-mir-99b

Stem-loop oha-mir-99b

Accession

MI0031496

Description

Ophiophagus hannah oha-mir-99b precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

gguugccauaAACCCGUAGAUCCGAACUUGCGGuaccacugcuucacaCAAGCUCGAGUCUGUGGGUAUgugucgaccu
(((((.((((.((((((((((.(((.((((.(..............).)))).))).)))))))))).)))).))))).

Structure

-     c    A          C   A    C Guacca 
 gguug caua ACCCGUAGAU CGA CUUG G      c
 ||||| |||| |||||||||| ||| |||| |       
 ccagc gugU UGGGUGUCUG GCU GAAC c      u
u     u    A          A   C    a acuucg

Annotation confidence Not enough data

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Genome context

AZIM01003436.1: 63475-63553 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-99b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-99b-5p

Accession	MIMAT0036966
Description	Ophiophagus hannah oha-miR-99b-5p mature miRNA
Sequence	11 - AACCCGUAGAUCCGAACUUGCGG - 33
Evidence	not_experimental

Mature oha-miR-99b-3p

Accession	MIMAT0036967
Description	Ophiophagus hannah oha-miR-99b-3p mature miRNA
Sequence	49 - CAAGCUCGAGUCUGUGGGUAU - 69
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656