miRBase entry: oha-mir-30d

Stem-loop oha-mir-30d


Accession
MI0031454
Description
Ophiophagus hannah oha-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

uuguagucuguuguUGUAAACAUCCCCGACUGGAAGCUggaaaacguagCUUUCAGUCCGAUGUUUGCUGCugcuggcuacuca
..((((((.((.((.(((((((((...((((((((((((.......)))))))))))).))))))))).)).)).))))))...

Structure
-uu      u  u  U         CCC            ga 
   guaguc gu gu GUAAACAUC   GACUGGAAGCUg  a
   |||||| || || |||||||||   ||||||||||||  a
   caucgg cg CG CGUUUGUAG   CUGACUUUCgau  a
acu      u  u  U         --C            gc 


Annotation confidence Not enough data
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Genome context
AZIM01004649.1: 79018-79101 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-30d-5p

Accession MIMAT0036895
Description Ophiophagus hannah oha-miR-30d-5p mature miRNA
Sequence 15 - UGUAAACAUCCCCGACUGGAAGCU - 38
Evidence not_experimental

Mature oha-miR-30d-3p

Accession MIMAT0036896
Description Ophiophagus hannah oha-miR-30d-3p mature miRNA
Sequence 50 - CUUUCAGUCCGAUGUUUGCUGC - 71
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656