miRBase entry: oha-mir-30c-2

Stem-loop oha-mir-30c-2


Accession
MI0031452
Description
Ophiophagus hannah oha-mir-30c-2 precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

ccuagccauguagcagugugUGUAAACAUCCUACACUCUCAGCUgugacuuugugguAGCUGGGAGAAGGUUGUUUACgccuccuggcauggacugg
.((((((((((..(((.(.(((((((((.(((...(((((((((((.((...)).))))))))))).))).)))))))))..)))))))))).))))

Structure
c    -      ag   u -u         U   ACA           g  u 
 cuag ccaugu  cag g  gUGUAAACA CCU   CUCUCAGCUgu ac  
 |||| ||||||  ||| |  ||||||||| |||   ||||||||||| || u
 gguc gguacg  guc c  cgCAUUUGU GGA   GAGGGUCGAug ug  
-    a      --   - uc         U   --A           g  u 


Annotation confidence Not enough data
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Genome context
AZIM01001612.1: 358960-359056 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oha-mir-30c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oha-miR-30c-5p

Accession MIMAT0036892
Description Ophiophagus hannah oha-miR-30c-5p mature miRNA
Sequence 21 - UGUAAACAUCCUACACUCUCAGCU - 44
Evidence not_experimental

Mature oha-miR-30c-2-3p

Accession MIMAT0036893
Description Ophiophagus hannah oha-miR-30c-2-3p mature miRNA
Sequence 58 - AGCUGGGAGAAGGUUGUUUAC - 78
Evidence not_experimental

References

  1. PubMed ID: 24297900
    The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
    "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
    "Proc Natl Acad Sci U S A (2013) 110:20651-20656