miRBase entry: oha-mir-29b-1

Stem-loop oha-mir-29b-1

Accession

MI0031444

Description

Ophiophagus hannah oha-mir-29b-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

agcuccuucaggaauCUGGUUUCAUAUGGUGGUUUAGauuuaaguacacaaugucUAGCACCAUUUGAAAUCAGUGUUuuugggggaaga
...(((((((((((((((((((((.((((((..((((((.............)))))))))))).))))))))).))))))))))))...

Structure

agc            -         U      GU      uuaag 
   uccuucaggaau CUGGUUUCA AUGGUG  UUAGau     u
   |||||||||||| ||||||||| ||||||  ||||||     a
   aggggguuuUUG GACUAAAGU UACCAC  GAUcug     c
aga            U         U      --      uaaca

Annotation confidence Not enough data

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Genome context

AZIM01006006.1: 36965-37054 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-29b-1-5p

Accession	MIMAT0036878
Description	Ophiophagus hannah oha-miR-29b-1-5p mature miRNA
Sequence	16 - CUGGUUUCAUAUGGUGGUUUAG - 37
Evidence	not_experimental

Mature oha-miR-29b-3p

Accession	MIMAT0036879
Description	Ophiophagus hannah oha-miR-29b-3p mature miRNA
Sequence	56 - UAGCACCAUUUGAAAUCAGUGUU - 78
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656