miRBase entry: oha-mir-27a

Stem-loop oha-mir-27a

Accession

MI0031437

Description

Ophiophagus hannah oha-mir-27a precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

gggcAGGGCUUAGCUCACUUGUGAACagcguuugauucagccaugUUCACAGUGGCUAAGUUCCGCCucuu
((((.(((((((((.((((.(((((((..(((......)))..)))))))))))))))))))).))))...

Structure

---    A         U    U       gc   ug 
   gggc GGGCUUAGC CACU GUGAACa  guu  a
   |||| ||||||||| |||| |||||||  |||   
   uCCG CUUGAAUCG GUGA CACUUgu  cga  u
uuc    C         -    -       ac   cu

Annotation confidence Not enough data

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Genome context

AZIM01000021.1: 587262-587332 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-27a-5p

Accession	MIMAT0036865
Description	Ophiophagus hannah oha-miR-27a-5p mature miRNA
Sequence	5 - AGGGCUUAGCUCACUUGUGAAC - 26
Evidence	not_experimental

Mature oha-miR-27a-3p

Accession	MIMAT0036866
Description	Ophiophagus hannah oha-miR-27a-3p mature miRNA
Sequence	46 - UUCACAGUGGCUAAGUUCCGCC - 67
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656